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NEWS (5/16/2013):
Mouse Distal Colon data sets added to CircaDB.
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(Examples
1451371_at 1422470_at gnf1m00037_a_at
or
Arntl
or
kinase inhibitor
)
Query syntax mode:
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Choose probability filter
JTK P-value
JTK Q-value
Lomb Scargle P-value
Lomb Scargle Q-value
DeLichtenberg P-value
DeLichtenberg Q-value
Probabily cut-off value
("0.5" or "2e-10")
JTK phase range
("0-6" or "10.30-11.10")
Select one or more experiments to view
(If nothing is selected, CIRCA will search all experiments.)
Mouse 1.OST Adrenal Gland (Affymetrix)
Mouse 1.OST Aorta (Affymetrix)
Mouse 1.OST Brown Adipose (Affymetrix)
Mouse 1.OST Brain Stem (Affymetrix)
Mouse 1.OST Cerebellum (Affymetrix)
Mouse 1.OST Heart (Affymetrix)
Mouse 1.OST Hypothalamus (Affymetrix)
Mouse 1.OST Kidney (Affymetrix)
Mouse 1.OST Liver (Affymetrix)
Mouse 1.OST Lung (Affymetrix)
Mouse 1.OST Skeletal Muscle (Affymetrix)
Mouse 1.OST White Adipose (Affymetrix)
Mouse Liver 48 hour Hughes 2009 (Affymetrix)
Mouse Pituitary 48 hour Hughes 2009 (Affymetrix)
Mouse NIH 3T3 Immortilized Cell Line 48 hour Hughes 2009 (Affymetrix)
Human U2 OS Hughes 2009 (Affymetrix)
Mouse Wild Type Liver (GNF microarray)
Mouse Wild Type Muscle (GNF microarray)
Mouse Wild Type SCN (GNF microarray)
Mouse Liver Panda 2002 (Affymetrix)
Mouse SCN MAS4 Panda 2002 (Affymetrix)
Mouse SCN gcrma Panda 2002 (Affymetrix)
Mouse Aorta Rudic 2004 (Affymetrix)
Mouse Kidney Rudic 2004 (Affymetrix)
Mouse Distal Colon 2008 (Affymetrix)
Tissue
liver
UCSC RNAseq
RNAseq_NM_213729
Probeset
1448034_at
Links
Wikipedia
HomoloGene
Symbol
Inca1
Unigene
Mm.101581
RefSeq Protein
NP_998894
RefSeq DNA
NM_213729
Description
inhibitor of CDK, cyclin A1 interacting protein 1
p-Value
q-Value
period
phase
JTK
7.33e-17
9.18e-14
25.0
11.0
Lomb Scargle
9.41e-08
9.2261e-05
24.383
12.41
DeLichtenberg
0.0181
0.568452
24.0
NA
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Tissue
liver
UCSC RNAseq
RNAseq_NM_008793
Probeset
1425824_a_at
Links
Wikipedia
HomoloGene
Symbol
Pcsk4
Unigene
Mm.299916
RefSeq Protein
NP_032819
RefSeq DNA
NM_008793
Description
proprotein convertase subtilisin/kexin type 4
p-Value
q-Value
period
phase
JTK
7.33e-17
9.18e-14
24.0
18.0
Lomb Scargle
7.01e-07
0.000207999
23.525
18.12
DeLichtenberg
0.0061
0.568452
24.0
NA
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Tissue
liver
UCSC RNAseq
RNAseq_NM_001013785
Probeset
1455454_at
Links
Wikipedia
HomoloGene
Symbol
Akr1c19
Unigene
Mm.22832
RefSeq Protein
NP_001013807
RefSeq DNA
NM_001013785
Description
aldo-keto reductase family 1, member C19
p-Value
q-Value
period
phase
JTK
1.3e-16
1.58e-13
24.0
20.0
Lomb Scargle
9.55e-07
0.000244724
23.525
22.18
DeLichtenberg
0.0543
0.593981
24.0
NA
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Tissue
liver
UCSC RNAseq
RNAseq_NM_013632
Probeset
1416530_a_at
Links
Wikipedia
HomoloGene
Symbol
Pnp
Unigene
Mm.17932
RefSeq Protein
NP_038660
RefSeq DNA
NM_013632
Description
purine-nucleoside phosphorylase
p-Value
q-Value
period
phase
JTK
1.72e-16
1.85e-13
25.0
4.5
Lomb Scargle
4.81e-08
9.13045e-05
24.836
30.33
DeLichtenberg
0.0376
0.568452
24.0
NA
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Tissue
liver
UCSC RNAseq
RNAseq_NM_001003898
RNAseq_NM_001003899
RNAseq_NM_001008545
RNAseq_NM_001008546
RNAseq_NM_145556
RNAseq_NR_027864
Probeset
1423723_s_at
Links
Wikipedia
HomoloGene
Symbol
Tardbp
Unigene
Mm.22453
RefSeq Protein
NP_001003898
NP_001003899
NP_001008545
NP_001008546
NP_663531
RefSeq DNA
NM_001003898
NM_001003899
NM_001008545
NM_001008546
NM_145556
NR_027864
Description
TAR DNA binding protein
p-Value
q-Value
period
phase
JTK
1.72e-16
1.85e-13
24.0
3.5
Lomb Scargle
6.27e-08
9.13045e-05
23.946
29.98
DeLichtenberg
0.0423
0.578713
24.0
NA
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Tissue
liver
UCSC RNAseq
RNAseq_NM_027985
Probeset
1460348_at
Links
Wikipedia
HomoloGene
Symbol
Mad2l2
Unigene
Mm.9648
RefSeq Protein
NP_082261
RefSeq DNA
NM_027985
Description
MAD2 mitotic arrest deficient-like 2 (yeast)
p-Value
q-Value
period
phase
JTK
1.72e-16
1.85e-13
24.0
7.0
Lomb Scargle
7.03e-08
9.13045e-05
24.383
31.35
DeLichtenberg
0.0151
0.568452
24.0
NA
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Tissue
liver
UCSC RNAseq
RNAseq_NM_008681
Probeset
1456174_x_at
Links
Wikipedia
HomoloGene
Symbol
Ndrg1
Unigene
Mm.30837
RefSeq Protein
NP_032707
RefSeq DNA
NM_008681
Description
N-myc downstream regulated gene 1
p-Value
q-Value
period
phase
JTK
1.72e-16
1.85e-13
24.0
9.0
Lomb Scargle
4.81e-07
0.000177816
23.525
33.93
DeLichtenberg
0.0062
0.568452
24.0
NA
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Tissue
liver
UCSC RNAseq
RNAseq_NM_016974
Probeset
1418174_at
Links
Wikipedia
HomoloGene
Symbol
Dbp
Unigene
Mm.378235
RefSeq Protein
NP_058670
RefSeq DNA
NM_016974
Description
D site albumin promoter binding protein
p-Value
q-Value
period
phase
JTK
1.72e-16
1.85e-13
23.0
17.0
Lomb Scargle
2.97e-06
0.000463366
22.725
17.36
DeLichtenberg
0.0
0.0
24.0
NA
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Tissue
liver
UCSC RNAseq
RNAseq_NM_001123371
RNAseq_NM_013632
Probeset
1453299_a_at
Links
Wikipedia
HomoloGene
Symbol
Pnp
Pnp2
Unigene
Mm.17932
RefSeq Protein
NP_001116843
NP_038660
RefSeq DNA
NM_001123371
NM_013632
Description
purine-nucleoside phosphorylase /// purine-nucleoside phosphorylase 2
p-Value
q-Value
period
phase
JTK
2.0e-16
2.09e-13
25.0
4.5
Lomb Scargle
5.93e-08
9.13045e-05
24.836
30.32
DeLichtenberg
0.0333
0.568452
24.0
NA
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Tissue
liver
UCSC RNAseq
RNAseq_NM_009381
Probeset
1424737_at
Links
Wikipedia
HomoloGene
Symbol
Thrsp
Unigene
Mm.28585
RefSeq Protein
NP_033407
RefSeq DNA
NM_009381
Description
thyroid hormone responsive SPOT14 homolog (Rattus)
p-Value
q-Value
period
phase
JTK
2.27e-16
2.23e-13
23.0
22.5
Lomb Scargle
4.03e-08
9.13045e-05
23.525
23.78
DeLichtenberg
0.0083
0.568452
24.0
NA
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